Publications
2024:
Jain, P., Huber, A.E., Rockwell, F.E., Sen, S., Holbrook, N.M., Stroock, A.D.. New approaches to dissect leaf hydraulics reveal large gradients in living tissues of tomato leaves. New Phytologist. (2024). https://doi.org/10.1111/nph.19585
Vincent, O., Tassin, T., Huber, E.J., Stroock, A.D.. Tunable transport in bi-disperse porous materials with vascular structure. arXiv (2024).
https://doi.org/10.48550/arXiv.2402.14628Jain, P., Huber, A.E., Rockwell, F.E., Sen, S., Holbrook, N.M., Stroock, A.D.. Localized measurements of water potential reveal large loss of conductance in living tissues of maize leaves. Plant Physiology, 194(4), 2288–2300 (2024). https://doi.org/10.1093/plphys/kiad679
2023:
Gonzalez Nieto, L., Huber, A., Gao, R., Biasuz, E.C., Cheng, L., Stroock, A.D., Lakso, A.N. and Robinson, T.L.. Trunk Water Potential Measured with Microtensiometers for Managing Water Stress in “Gala” Apple Trees. Plants, 12(9), p.1912 (2023).
2022:
The CROPPS Research Community. Digital Biology to Enable Sustainable and Resilient Agriculture. The Bridge (NAE), 52, 30-34, Summer 2022.
Prajwal, B.P., Huang, J.Y., Ramaswamy, M., Stroock, A.D., Hanrath, T., Cohen, I. and Escobedo, F.A. Re-entrant transition as a bridge of broken ergodicity in confined monolayers of hexagonal prisms and cylinders. Journal of Colloid and Interface Science, 607, pp.1478-1490 (2022).
Rockwell, F.E., Holbrook, N.M., Jain, P., Huber, A.E., Sen, S., and Stroock, A.D. Extreme undersaturation in the intercellular airspace of leaves: a failure of Gaastra or Ohm? Annals of Botany 130, 301-316 (2022).
Dahake, A., Jain, P., Vogt, C.C., Kandalaft, W., Stroock, A.D. and Raguso, R.A. A signal-like role for floral humidity in a nocturnal pollination system. Nature Communications, 13(1), p.7773 (2022).
Lakso, A.N., Santiago, M. and Stroock, A.D. Monitoring Stem Water Potential with an Embedded Microtensiometer to Inform Irrigation Scheduling in Fruit Crops. Horticulturae, 8(12), p.1207 (2022).
2021:
Lidon, P., Perrot, E. and Stroock, A.D. Multi-phase, non-isothermal transfer of water in a simple geometry. Physical Review Fluids, 6(2), p.023801 (2021).
W.-H. Chen, Shang, C., Zhu, S., Haldeman, K., Santiago, M., Stroock, A.D., You, F. Data-driven robust model predictive control framework for stem water potential regulation and irrigation in water management. Control Engineering Practice 113, 104841 (2021).
Jain, P., Liu, W., Zhu, S., Chang, C.Y.-Y., Melkonian, J., Rockwell, F.E., Pauli, D., Sun, Y., Zipfel, W., Holbrook, N.M., Riha, S.J., Gore, M.A. and Stroock, A.D., 2020. A minimally disruptive method for measuring water potential in-planta using hydrogel nanoreporters. Proc. Natl. Acad. Sci. 118 (23) e2008276118 (2021). (featured in Wired)
2019:
Vincent, O., Zhang, J., Choi, E., Zhu, S. and Stroock, A.D. How solutes modify the thermodynamics and dynamics of filling and emptying in extreme ink-bottle pores. Langmuir, 35(8), 2934-2947 (2019).
Jain, P., Vincent, O. and Stroock, A.D. Adsorption, desorption, and crystallization of aqueous solutions in nanopores. Langmuir, 35(11), pp.3949-3962 (2019).
Black, W.L., Santiago, M., Zhu, S. and Stroock, A.D. Ex Situ and In Situ Measurement of Water Activity with a MEMS Tensiometer. Analytical chemistry, 92(1), pp.716-723 (2019).
Shang, C., Chen, W.H., Stroock, A.D. and You, F. Robust model predictive control of irrigation systems with active uncertainty learning and data analytics. IEEE transactions on control systems technology, 28(4), pp.1493-1504 (2019).
2018:
Huber, E.J., Stroock, A.D. & Koch, D.L. Modeling the dynamics of remobilized CO2 within the geologic subsurface. International Journal of Greenhouse Gas Control, 70, 128-145 (2018).
Borker, N.S., Stroock, A.D., & Koch, D.L. Controlling rotation and migration of rings in a simple shear flow through geometric modifications. Journal of Fluid Mechanics, 840, 379-407 (2018).
Lidon, P., Marker, S.C., Winson, J.J., Williams, R.M., Zipfel, W.R. & Stroock, A.D., Enhanced oxygen solubility in metastable water under tension. Langmuir, 34, 12017-12024 (2018).
Shan, M., Dai, D., Vudem, A., Varner, J.D. & Stroock, A.D. Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors. PLOS Computational Biology, 14(12): e1006584 (2018).
2017:
Comtet, J., Turgeon, R. & Stroock, A.D., Phloem loading through plasmodesmata: a biophysical analysis. Plant Physiology, 175, 904-915 (2017).
Comtet, J., Jensen, K., Turgeon, R., Stroock, E.D. & Hosoi, A. Passive phloem loading and long-distance transport in a synthetic tree-on-a-chip. Nature Plants, 3, 17032 (2017). (pdf)
Vincent, O., Marguet, B. & Stroock, A.D., Imbibition Triggered by Capillary Condensation in Nanopores.. Langmuir. 33, 1655-1661 (2017). (pdf)
2016:
Chen, I-T., Sessoms, D.A, Sherman, Z., Choi, E., Vincent, O., Stroock, A.D., Stability Limit of Water by Metastable Vapor-Liquid Equilibrium with Nanoporous Silicon Membranes.J. Phys. Chem. B, 120, 5209–5222 (2016).
Huber, E.J, Stroock, A.D., & Koch, D.L., Analysis of a time dependent injection strategy to accelerate the residual trapping of sequestered CO2 in the geologic subsurface. International Journal of Greenhouse Gas Control, 44, 185–198 (2016).
Vincent, O., Szenicer, A., & Stroock, A.D., Capillarity-Driven Flows at the Continuum Limit. Soft Matter, 12, 6656-6661 (2016). (Supplemental Materials)
Song, Y.H., Shon, S.H., Shan, M., Stroock, A.D. & Fischbach, C., Adipose-derived Stem Cells Increase Angiogenesis through Matrix Metalloproteinase-dependent Collagen Remodeling. Integrative Biology, 8, 205-215 (2016).
2015:
Diaz-Santana, A., Shan, M., & Stroock, A.D. Endothelial cell dynamics during anastomosis in vitro. Integrative Biology, 7, 454 - 466 (2015).
DelNero, P., Lane, M., Verbridge, S.S., Kwee, B., Rabbany, P., Hempstead,, B. Stroock, A.D., Fischbach, C. 3D culture regulates tumor hypoxia response and angiogenesis via inflammatory pathway. Biomaterials, 55, 110-118 (2015).
2014:
Vincent, O., Sessoms, D.A., Huber, E.J., Guioth, J. & Stroock, A.D. Drying by cavitation and poroelastic relaxations in porous media with macroscopic pores connected by nanoscale throats. Physical Review Letters, 113, 134501 (2014). (pdf). (News & Views article by Philip Ball)
Deseigne, J., Cottin-Bizonne, C., Stroock, A. D., Bocquet, L., & Ybert, C. How a" pinch of salt" can tune chaotic mixing of colloidal suspensions. Soft Matter, 10, 4795-4799 (2014).
Pagay, V., Santiago, M., Sessoms, D.A., Huber, E.J., Vincent, O., Pharkya, A., Corso, T.N., Lakso, A.N. & Stroock, A.D. A microtensiometer capable of measuring water potentials below -10 MPa. Lab-on-a-Chip, 14, 2806-2817 (2014).
Stroock, A. D., Pagay, V. V., Zwieniecki, M. A. & Holbrook, N. M. The physicochemical hydrodynamics of vascular plants. Annual Review of Fluid Mechanics, 46, 615-642 (2014).
Rockwell, F. E., Holbrook, N. M. & Stroock, A. D. Leaf hydraulics I: Scaling transport properties from single cells to tissues. Journal of Theoretical Biology, 340. 251–266 (2014).
Rockwell, F. E., Holbrook, M. N. & Stroock, A. D. Leaf hydraulics II: Vascularized tissues. Journal of Theoretical Biology 340. 267–284 (2014).
Chen, I.-T., Pharkya, A. & Stroock, A. D. Analysis of Superheated Loop Heat Pipes Exploiting Nanoporous Wick Membranes. AICHE Journal, 60, 762-777 (2014)
Rockwell, F. E., Holbrook, N. M. & Stroock, A. D. The competition between liquid and vapor transport in transpiring leaves. Plant Physiology, 164, 1741-1758 (2014).
2013:
Morgan, J.P., Delnero, P.F., Zheng, Y., Verbridge, S.S., Chen, J., Craven, M., Choi, N., Diaz-Santana, A., Kermani, P., Hempstead, B., López, J.A., Corso, T.N., Fischbach-Teschl, C., Stroock, A.D. Formation of Microvascular Networks in vitro. Nature Protocols, 8, 1820-1836 (2013).
Santiago, M., Pagay, V. V. & Stroock, A. D. Impact of Electroviscosity on the Hydraulic Conductance of the Bordered Pit Membrane: a Theoretical Investigation. Plant Physiology, 163, 999-1011 (2013).
Caupin, F. and Stroock, A.D., The stability limit and other open questions on water at negative pressure. Advances in Chemical Physics, Liquid Polymorphism, 152, 51-80 (2013).
Singh, V., Koch, D.L., and Stroock, A.D., Rigid ring shaped particles that align in simple shear flow. Journal of Fluid Mechanics, 722, 121-158 (2013).
Verbridge, S. S., DelNero, P., Chakrabarti, A., Kwee, B., Varner, J. D., Stroock, A. D. & Fischbach, C. Physicochemical regulation of endothelial sprouting in a 3-D microfluidic angiogenesis model. Journal of Biomedical Materials Research: Part A. 101, 2948-2956 (2013).
2012:
Chakrabarti, A., Verbridge, S., Stroock, A. D., Fischbach, C. & Varner, J. D. Multiscale Models of Breast Cancer Progression. Ann Biomed Eng 40, 2488-2500 (2012).
Sundararajan, P., Kirtland, J.D., Koch, D.L., Stroock, A.D. Impact of chaos and Brownian diffusion on irreversibility in Stokes flows. Physical Review E. 86, 046203 (2012).
Zheng, Y., Chen, J., Craven, M., Choi, N. W., Totorica, S., Diaz-Santana, A., Kermanie, P., Hempstead, B., Fischbach, C., López, J. A. & Stroock, A. D. In vitro microvessels for the study of angiogenesis and thrombosis. Proceedings of the National Academy of Sciences 109, 9342-9347 (2012). (Nature News & Views)
Choi, N. W., Verbridge, S. S., Williams, R. M., Chen, J., Kim, J.-Y., Schmehl, R., Farnum, C. E., Zipfel, W. R., Fischbach, C. & Stroock, A. D. Phosphorescent nanoparticles for quantitative measurements of oxygen profiles in vitro and in vivo. Biomaterials 33, 2710–2722 (2012).
Da Mota, N., Kirtland, J. D., Finkelstein, D. A., Rodriguez, C. A., Stroock, A. D. & Abruña, H. D. Membraneless, Room-Temperature, Direct Borohydride /Cerium Fuel Cell with Power Density of Over 0.25 W/cm2. Journal of the American Chemical Society 134, 6076–6079 (2012). (news story by Royal Society of Chemistry)
Sudararajan, P. & Stroock, A. D. Transport phenomena in Chaotic Laminar Flows. Annual Reviews of Chemical and Biomolecular Engineering. 3, 473-496 (2012).
Caupin, F., Arvengas, A., Davitt, K., El Mekki Azouzi, M., Shmulovich, K. I., Ramboz, C., Sessoms, D. A. & Stroock, A. D. Exploring water and other liquids at negative pressure. Journal Physics: Condensed Matter, 12, 284110 (2012).
Reiffel, A. J., Henderson, P. W., Krijgh, D. D., Belkin, D., Zheng, Y., Bonassar, L. J., Stroock, A. D. & Spector, J. A. Mathematical Modeling and Frequency Gradient Analysis of Cellular and Vascular Invasion into Integra® and Strattice®: Towards Optimal Design of Tissue Regeneration Scaffolds. Plastic and Reconstructive Surgery 129, 89-99 (2012).
2011:
Zheng, Y., Henderson, P.W., Choi, N.W., Bonassar, L.J., Spector, J.A., and Stroock, A.D., Microstructured templates for directed growth and vascularization of soft tissue in vivo, Biomaterials 32, 5391-5401 (2011). (news story in Los Angeles Times)
Finkelstein, D.A., Kirtland, J.D., Da Mota, N., Stroock, A.D., and Abruna, H.D., Alternative Oxidants for High-Power Fuel Cells Studied by Rotating Disk Electrode (RDE) Voltammetry at Pt, Au, and Glassy Carbon Electrodes, Journal of Physical Chemistry C 115, 6073-6084 (2011).
Singh, V., Koch, D. L. & Stroock, A. D. Ideal Rate of Collision of Cylinders in Simple Shear Flow. Langmuir 27, 11813-11823 (2011).
2010:
Stroock, A.D., Fischbach, C., Microfluidic culture models of tumor angiogenesis, Tissue Engineering Part A, 16, 2143-2146 (2010).
Verbridge, S.S., Choi, N., Zheng, Y., Brooks, D.J., Stroock, A.D., Fischbach, C., Oxygen-controlled 3-D cultures to analyze tumor angiogenesis, Tissue Engineering Part A, 16, 2157-2159 (2010).
Cross, V.L., Zheng, Y., Choi, N.W., Verbridge, S.S., Sutermaster, B.A., Bonassar, L.J., Fischbach, C., and Stroock, A.D., Dense type I collagen matrices that support cellular remodeling and microfabrication for studies of tumor angiogenesis and vasculogenesis in vitro, Biomaterials, 31, 8596-8607 (2010).
2009:
Kirtland, J.D.; Siegel, C.R.; Stroock, A.D. Interfacial mass transport in steady three-dimensional flows in microchannels. New Journal of Physics. 11, 075028 (2009).
Wheeler, T.D. and Stroock, A.D. Stability Limit of Liquid Water in Metastable Equilibrium with Subsaturated Vapors. Langmuir. 25, 7609-7622 (2009).
2008:
Badaire, S.; Cottin-Bizonne, C.; Stroock, A.D., Experimental Investigation of Selective Colloidal Interactions Controlled by Shape, Surface Roughness, and Steric Layers. Langmuir. 24, 11451 - 11463 (2008).
Gleghorn, J. P.; Lee, C.S.D.; Cabodi, M.; Stroock, A. D.; Bonassar, L. J., Adhesive properties of laminated alginate gels for tissue engineering of layered structures. J. Biomed. Mat. Res. A, 85A, 611-618 (2008).
Villermaux, E.;Stroock, A. D.;Stone, H. A., Bridging kinematics and concentration content in a chaotic micromixer. Physical Review E 77, 015301_1-4 (2008).
Wheeler, T.D. and Stroock, A.D., Transpiration at negative pressures in a Synthetic Tree. Nature, 455, 208-212 (2008).
2007:
Badaire S.; Cottin-Bizonne, C. ; Woody, J. W.; Yang, A.; Stroock, A. D. Shape selectivity in the assembly of lithographically designed colloidal particles. J. Am. Chem. Soc., 129, 40-41 (2007).
Cabodi, M. ; Cross, V.; Qu, Z.; Haverstrite, K.; Schwartz, S.; Stroock, A. D. An active wound dressing for controlled convective mass transfer with the wound bed. J. Biomed. Mat. Res. B: App. Biomat., 82B, 210-222. (2007).
Kane, R. S.; Stroock, A. D., Nanobiotechnology: Protein-nanomaterial interactions. Biotech. Prog., 23, 316-319 (2007).
Lee C.S.D., G. J. P., Choi N.W., Cabodi M. , Stroock A.D., Bonassar L.J., Integration of layered chondrocyte-seeded alginate hydrogel scaffolds. Biomaterials. 28, 2987-2993 (2007).
Choi, N. W.; Cabodi, M.; Held, B.; Gleghorn, J. P.; Bonassar, L. J.; Stroock, A. D., Microfluidic scaffolds for tissue engineering. Nature Materials 6, 908-915 (2007).
2006:
Martinez, L. M. C.; Martinez-Veracoechea, F. J.; Pohkarel, P.; Stroock, A. D.; Escobedo, F. A.; DeLisa, M. P. Protein translocation through a tunnel induces changes in folding kinetics: A lattice model study. Biotech. Bioeng., 94, 105-117 (2006).
Kirtland, J. D.; McGraw, G. J.; Stroock, A. D. Mass transfer to reactive boundaries from steady three-dimensional flows in microchannels. Physics of Fluids, 18, 073602 (2006). (pdf)
Kenis, P. J. A.; Stroock, A. D. Materials for micro- and nanofluidics. MRS Bulletin, 31, 87-94 (2006).
Stroock, A. D.; Cabodi, M. Microfluidic biomaterials. MRS Bulletin, 31, 114-119 (2006).
2005 and earlier:
Cabodi, M.; Choi, N. W.; Gleghorn, J. P.; Lee, C. S.; Bonassar, L. J.; Stroock, A. D. A microfluidic biomaterial. J. Am. Chem. Soc., 127, 13788-13789 (2005). (pdf)
Stroock, A. D.; Wheeler, T. D.; Kirtland, J. Microfluidic relief for transport limitations. Biotechniques, 39, 159-163 (2005).
Jiang, X.; Xu, Q.; Dertinger, S. K.; Stroock, A. D.; Fu, T. M.; Whitesides, G. M. A general method for patterning gradients of biomolecules on surfaces using microfluidic networks. Anal. Chem., 77, 2338-2347 (2005).
John, B. S.; Stroock, A.; Escobedo, F. A. Cubatic liquid-crystalline behavior in a system of hard cuboids. J. Chem. Phys., 120, 9383-9389 (2004). (pdf)
Lauga, E.; Stroock, A. D.; Stone, H. A. Three-dimensional flows in slowly varying planar geometries. Physics of Fluids, 16, 3051-3062 (2004).
Stone, H. A.; Stroock, A. D.; Ajdari, A. Engineering flows in small devices: Microfluidics toward a lab-on-a-chip. Annual Review of Fluid Mechanics, 36, 381-411 (2004). (pdf)
Stroock, A. D.; McGraw, G. J. Investigation of the staggered herringbone mixer with a simple analytical model. Phil. Trans. Roy. Soc. A -Math. Phys. Eng. Sci., 362, 971-986 (2004). (pdf)
Gitlin, I.; Stroock, A. D.; Whitesides, G. M.; Ajdari, A. Pumping based on transverse electrokinetic effects. App. Phys. Lett., 83, 1486-1488 (2003).
Jiang, X. Y.; Ng, J. M. K.; Stroock, A. D.; Dertinger, S. K. W.; Whitesides, G. M. A miniaturized, parallel, serially diluted immunoassay for analyzing multiple antigens. J. Am. Chem. Soc., 125, 5294-5295 (2003).
Stroock, A. D.; Ismagilov, R. F.; Stone, H. A.; Whitesides, G. M. Fluidic ratchet based on Marangoni-Benard convection. Langmuir, 19, 4358-4362 (2003).
Stroock, A. D.; Kane, R. S.; Weck, M.; Metallo, S. J.; Whitesides, G. M. Synthesis of free-standing quasi-two-dimensional polymers. Langmuir, 19, 2466-2472 (2003).
Stroock, A. D.; Whitesides, G. M. Controlling flows in microchannels with patterned surface charge and topography. Accounts of Chemical Research, 36, 597-604 (2003).
McDonald, J. C.; Chabinyc, M. L.; Metallo, S. J.; Anderson, J. R.; Stroock, A. D.; Whitesides, G. M. Prototyping of microfluidic devices in poly(dimethylsiloxane) using solid-object printing. Anal. Chem., 74, 1537-1545 (2002).
Ng, J. M. K.; Gitlin, I.; Stroock, A. D.; Whitesides, G. M. Components for integrated poly(dimethylsiloxane) microfluidic systems. Electrophoresis, 23, 3461-3473 (2002).
Stroock, A. D.; Dertinger, S. K.; Whitesides, G. M.; Ajdari, A. Patterning flows using grooved surfaces. Analytical Chemistry, 74, 5306-5312 (2002).
Stroock, A. D.; Dertinger, S. K. W.; Ajdari, A.; Mezic, I.; Stone, H. A.; Whitesides, G. M. Chaotic mixer for microchannels. Science, 295, 647-651 (2002). (pdf)
Ferrigno, R.; Stroock, A. D.; Clark, T. D.; Mayer, M.; Whitesides, G. M. Membraneless vanadium redox fuel cell using laminar flow. J. Am. Chem. Soc., 124, 12930-12931 (2002). Addition: J. Am. Chem. Soc., 125, 2014-2014 (2003). (pdf)
Chabinyc, M. L.; Chiu, D. T.; McDonald, J. C.; Stroock, A. D.; Christian, J. F.; Karger, A. M.; Whitesides, G. M. An integrated fluorescence detection system in poly(dimethylsiloxane) for microfluidic applications. Analytical Chemistry, 73, 4491-4498 (2001).
Chiu, D. T.; Pezzoli, E.; Wu, H. K.; Stroock, A. D.; Whitesides, G. M. Using three-dimensional microfluidic networks for solving computationally hard problems. Proc. Nat. Acad. Sci., 98, 2961-2966 (2001).
Ismagilov, R. F.; Rosmarin, D.; Gracias, D. H.; Stroock, A. D.; Whitesides, G. M. Competition of intrinsic and topographically imposed patterns in Benard-Marangoni convection. App. Phys. Lett., 79, 439-441 (2001).
Huck, W. T. S.; Stroock, A. D.; Whitesides, G. M. Synthesis of geometrically well defined, molecularly thin polymer films. Angewandte Chemie-International Edition, 39, 1058-1061 (2000).
Ismagilov, R. F.; Stroock, A. D.; Kenis, P. J. A.; Whitesides, G.; Stone, H. A. Experimental and theoretical scaling laws for transverse diffusive broadening in two-phase laminar flows in microchannels. Applied Physics Letters, 76, 2376-2378 (2000).
Jeon, N. L.; Dertinger, S. K. W.; Chiu, D. T.; Choi, I. S.; Stroock, A. D.; Whitesides, G. M. Generation of solution and surface gradients using microfluidic systems. Langmuir, 16, 8311-8316 (2000).
Stroock, A. D.; Weck, M.; Chiu, D. T.; Huck, W. T. S.; Kenis, P. J. A.; Ismagilov, R. F.; Whitesides, G. M. Patterning electro-osmotic flow with patterned surface charge. Physical Review Letters, 84, 3314-3317 (2000). Erratum: PRL, 86, 6050 (2001).
Whitesides, G. M.; Stroock, A. D. Flexible methods for microfluidics. Physics Today, 54, 42-48 (2001).
Huck, W. T. S.; Yan, L.; Stroock, A.; Haag, R.; Whitesides, G. M. Patterned polymer multilayers as etch resists. Langmuir, 15, 6862-6867 (1999).
Stroock, A.; Manuel, P.; Bouillault, F. Evaluation of coupling losses in RTD-superconducting cables using OPIT and IBAD tapes. European Physical Journal-Applied Physics, 7, 119-125 (1999).
Book chapters:
Aubin, J. and Stroock, A.D. (2012) An introduction to micromixers. Handbook of industrial mixing: science and practice. Eds. S. Kresta. Interscience.
Kirtland, J.D.; Stroock, A.D. (2011) Interfacial Transfer from Stirred Laminar Flows. “Mixing in Laminar Fluid Flows: From Microfluidics to Oceanic Currents.” Ed. Grigoriev, R.O. Weinheim, Wiley-VCH.
Stroock, A.D. (2008) Microfluidics. “Optical Biosensors 2008: Present and Future.” Eds. F. G. Ligler and C. A. Rowe Taitt. Amsterdam, Elsevier
Stroock, A.D. (2004) Microfluidics. “McGraw-Hill Yearbook of Science and Technology.” New York, McGraw-Hill Professional.
Kane, R. S.; Stroock, A. D.; Jeon, N.-L.; Ingber, D. E.; Whitesides, G. M. (2002). Soft Lithography and Microfluidics. Optical Biosensors Present and Future. F. G. Ligler and C. A. Rowe Taitt. Amsterdam, Elsevier.